Oligoclasses package

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August undefined, 2024

WebSource Package: oligo_1.62.2.tar.gz: Windows Binary: oligo_1.62.2.zip: macOS Binary (x86_64) oligo_1.62.2.tgz: macOS Binary (arm64) oligo_1.62.2.tgz: Source Repository WebNEWS 3 BUGFIXES: • Rscript -e wouldfailif‘stdin’wereclosed(ReportedbyHenrikBengtsson.) • qt(*, log.p=TRUE) inoutertailsnolongerproducesNaN initsfinalsteps ...

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Webbiotools: oligoclasses, doi: 10.1038/nmeth.3252 This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages. package bioconductor-oligoclasses ¶ Web09. jul 2024. · Start with the first error, and the first package that fails ** using staged installation checking for curl-config... no Cannot find curl-config ERROR: configuration failed for package ‘RCurl’ Your system requires the system dependency libcurl, and it needs the development headers for that. convert bhp to psi

oligo package - RDocumentation

Web30. jul 2024. · BiocManager::install("oligoClasses") But when trying to load the library, I get the following error: Error: package or namespace load failed for ‘oligoClasses’: objects … WebMethods defined in packages that depend on oligoClasses. Functions to convert probabilities to integers, or integers to probabilities. Number of samples for FeatureSet … WebThis package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see oligoClasses. Classes for high-throughput arrays supported by oligo and crlmm. … convert bht to cnd

Biostar OligoClasses - Bioconductor

WebError: package ‘oligoClasses’ could not be loaded I'm not sure where the problem is - whether it is with the oligoClasses or with the oligo, but I could not find any way to fix this. I would greatly appreciate any suggestions! Webaffy oligoclasses oligo package pdinfobuilder annotationdbi updated 5.6 years ago by James W. MacDonald 62k • written 5.6 years ago by Aedin Culhane ▴ 510 2. votes. … convert bhp to mmbtu/hrWeb08. nov 2024. · affyPlatforms: Available Affymetrix platforms for SNP arrays AlleleSet-class: Class "AlleleSet" AlleleSet-methods: Compute average log-intensities / log-ratios annotationPackages: Annotation Packages AssayDataList: Create a list of assay data elements assayDataList-methods: Accessor for slot assayDataList in Package … fallout military

"Web03. avg 2024. · I tried to install on Ubuntu 18 package "OligoClasses" from Bioconductor but it gives the following error: " Error: objects ‘open.ff’, ‘close.ff’ are not exported by … " - Oligoclasses package

Oligoclasses package

OligoClasses — bioconductor v3.9.0 - Homolog.us

Web08. nov 2024. · Function used to get a list of CEL files. affyPlatforms: Available Affymetrix platforms for SNP arrays AlleleSet-class: Class "AlleleSet" AlleleSet-methods: Compute … Web01. nov 2024. · 错误: 无法载入程辑包‘oligoClasses’. Oligo和Affy一样是处理芯片数据的包，可以读取CEL文件进行rma或者mas5标准化。. 在最近安装Oligo包之后出现上述报错. …

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WebError: package or namespace load failed for ‘oligoClasses’: objects ‘open.ff’, ‘close.ff’ are not exported by 'namespace:ff' I am running rstudio from within a conda env with R 3.6.1 … WeboligoClasses Deprecated. manufacturer-methods. Manufacturer ID for FeatureSet-like objects. checkOrder. Checks whether a eSet-derived class is ordered by chromosome and physical position. splitIndicesByLength. Tools to distribute objects across nodes or by length. exprs-methods. Accessor for the 'exprs' slot.

WeboligoClasses Deprecated. manufacturer-methods. Manufacturer ID for FeatureSet-like objects. checkOrder. Checks whether a eSet-derived class is ordered by chromosome …

WebThis package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see oligoClasses. Classes for high-throughput arrays supported by oligo and crlmm. … WebHowever, it might be the case that the affy package is not designed for your array type. Then, you should switch to the oligo and oligoClasses packages and normalize with analogous function rma. cel_Files <- oligoClasses::list.celfiles() affyRaw <- oligo::read.celfiles(cel_Files) eset <- oligo::rma(affyRaw)

WebFile listing for oligoClasses. affyPlatforms: Available Affymetrix platforms for SNP arrays AlleleSet-class: Class "AlleleSet" AlleleSet-methods: Compute average log-intensities / …

WebThis is not a complete answer as I've never used the oligoClasses package. But your celpath seems to point to a file rather than a path. I'd guess that celFiles is a 0 length vector. Remove the file name from the path and see what happens. Also can read.celfiles handle zipped files? From the documentation it seems to handle gzip compressed ... convert bibitem to bibtex onlineWebFunction used to get a list of CEL files. fallout mini fridgeWeb30. jul 2024. · Error: package or namespace load failed for ‘oligoClasses’: objects ‘open.ff’, ‘close.ff’ are not exported by 'namespace:ff' It seems that the problem originates in ff. I'm … convert bibitem to bibtexWeba character vector of the names of annotation packages AssayData-methods Methods for class AssayData in the oligoClasses package Description Batch statistics used for estimating copy number are stored as AssayData in the ’batchStatistics’ slot of the CNSet class. Each element in the AssayData must have the same number of rows and columns. convert bhp to wattsWeb04. feb 2024. · Provides a parallel backend for the %dopar% function using the snow package of Tierney, Rossini, Li, and Sevcikova. doSNOW: Foreach Parallel Adaptor for the 'snow' Package. ... MinimumDistance, oligoClasses, VanillaICE: Linking: Please use the canonical form ... convert bibtex to csvWebbiotools: oligoclasses, doi: 10.1038/nmeth.3252 This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm … fallout miss launcherWebThis package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages. Toggle navigation : oligoclasses × convert bibtex to apa